Plot kinase network

Plot kinase network

plotKinaseNetwork(KSR, predMatrix, threshold = 0.9, color, 
type = NULL, verbose = FALSE)

Arguments

KSR

Kinase-substrate relationship scoring results

predMatrix

Output of kinaseSubstratePred function

threshold

Threshold used to select interconnected kinases for the expanded signalomes

color

A string specifying the color vector for nodes

type

A type (graph or chord) of plot. If NULL, network graph is plotted

verbose

Default to TRUE to show messages during the progress. All messages will be suppressed if set to FALSE

Value

a graphical plot